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* Mismatch issue of Documents shown and Citation number in text fix When document order presented to LLM differs from order shown to user, wrong doc numbers are cited. Fix: - SearchTool.get_search_result returns now final and initial ranking - initial ranking is passed through a few objects and used for replacement in citation processing Notes: - the citation_num in the CitationInfo() object has not been changed. * PR fixes - linting - removed erroneous tab - added a substitution test case - adjusted original citation extraction use case * Included a key test and * Fixed extra spaces * Updated test documentation Updated: - test_citation_substitution (changed description) - test_citation_processing (removed data only relevant for the substitution)