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Every block index entry currently requires a separately-allocated CBigNum. By replacing them with uint256, it's just 32 bytes extra in CBlockIndex itself. This should save us a few megabytes in RAM, and less allocation overhead.
These patches are applied when the automated pull-tester tests each pull and when master is tested using jenkins. You can find more information about the tests run at http://jenkins.bluematt.me/pull-tester/files/